Ismail Koubiyr, Takayuki Yamamoto, Simon Blyau, Reda A. Kamroui, Boris Mansencal, Vincent Planche, Laurent Petit, Manojkumar Saranathan, Romain Casey, Aurélie Ruet, Bruno Brochet, José V. Manjón, Vincent Dousset, Pierrick Coupé and Thomas Tourdias. Vulnerability of thalamic nuclei at CSF interface during the entire course of multiple sclerosis. Neurology: Neuroimmunology and Neuroinflammation, 2024.
Vincent Planche, Boris Mansencal, José V. Manjon, Wassilios G. Meissner, Thomas Tourdias and Pierrick Coupé. Staging of Progressive Supranuclear Palsy-Richardson Using MRI Brain Charts for the Human Lifespan. Brain Communications, 2024.
Pierrick Coupé, Vincent Planche, Boris Mansencal, Reda A Kamroui, Ismail Koubiyr, José V Manjon, Thomas Tourdias. Lifespan Neurodegeneration Of The Human Brain In Multiple Sclerosis. Human Brain Mapping, 2023.
Vincent Planche, Boris Mansencal, José V manjon, Thomas Tourdias, Gwenaëlle Catheline and Pierrick Coupé. The anatomical MRI staging of frontotemporal dementia variants. Alzheimer's & Dementia, 2023.
Andrea McKavanagh, Adam Ridzuan-Allen, Barbara A.K. Kreilkamp, Yachin Chen, José V. Manjón, Pierrick Coupé, Martyn Bracewell, Kumar Das, Peter N. Taylor, Anthony G. Marson, Simon S. Keller. Midbrain structure volume, estimated myelin and functional connectivity in idiopathic generalised epilepsy. Epilepsy & Behavior, 2023.
Reda A Kamraoui, Boris Mansencal, Jose V Manjon and Pierrick Coupe. Longitudinal detection of new MS lesions using Deep Learning. Frontiers in Neuroimaging, 2022.
José V. Manjón, José E. Romero, Roberto Vivo-Hernando, Gregorio Rubio, Fernando Aparici, Mariam de la Iglesia-Vaya and Pierrick Coupé. vol2Brain: A new online Pipeline for whole Brain MRI analysis. Frontiers in Neuroinformatics, 2022.
Vincent Planche, José V. Manjon, Boris Mansencal, Enrique Lanuza, Thomas Tourdias, Gwenaëlle Catheline and Pierrick Coupé. Structural progression of Alzheimer’s disease over decades : the MRI staging scheme. Brain Communications, 2022.
Pierrick Coupé, José V. Manjón, Boris Mansencal, Thomas Tourdias, Gwenaëlle Catheline and Vincent Planche. HAVAs: Alzheimer’s Disease Detection using Normative and Pathological Lifespan Models. Human Brain Mapping, 2022.
Jose V. Manjón, Jose E. Romero and Pierrick Coupé. DeepHIPS: A novel Deep Learning based Hippocampus Subfield Segmentation method. Scientific Reports, 2022.
Reda Abdellah Kamraoui, Vinh-Thong Ta, Thomas Tourdias, Boris Mansencal, Jose V Manjon, Pierrick Coupe.Towards a broader deep-learning generalization for multiple sclerosis lesion segmentation. Medical Image Analysis, 2022.
Jose V Manjon, José E. Romero, Pierrick Coupe.Deep Learning based MRI contrast synthesis using full volume prediction. Biomedical Physics & Engineering Express, 2022.
Lee B Reid, Eloy Martínez-Heras, Jose V Manjón, Rosalind L. Jeffree, Hamish Alexander, Julie Trinder, Elisabeth Solana, Sara Llufriu, Stephen Rose, Marita Prior, Jurgen Fripp. Fully Automated Delineation of the Optic Radiation for Surgical Planning using Clinically Feasible Sequences. Human Brain Mapping, 2021.
Grégoire Pin, Pierrick Coupé, Louis Nadal, Jose V. Manjon, Catherine Helmer, Hélène Amieva, Bernard Mazoyer, Jean-François Dartigues, Gwénaëlle Catheline and Vincent Planche. Distinct Hippocampal Subfields Atrophy in Older People With Vascular Brain Injuries. Stroke, 2021.
José E. Romero, Pierrick Coupe, Enrique Lanuza, Gwenaelle Catheline and José V. Manjón.Towards a unified analysis of cerebellum maturation and aging across the entire lifespan: A MRI analysis. Human Brain Mapping, 2021.
Killian Hett, V-T. Ta, Ipek Oguz, Jose V. Manjón, Pierrick Coupé. Multi-scale Graph-based Grading for Alzheimer's Disease Prediction. Medical Image Analysis, 2021.
Baudouin Denis de Senneville, Jose V. Manjon, Pierrick Coupé. RegQCNET: Deep Quality Control for Image-to-template Brain MRI Affine Registration. Physics in Medicine and Biology, 2020.
P. Coupé, B. Mansencal, M. Clément, R. Giraud, B. Denis de Senneville, V.-T Ta, V. Lepetit and Jose V. Manjón. AssemblyNet: A large ensemble of CNNs for 3D Whole Brain MRI Segmentation. Neuroimage, 2020.
Louis Nadal, Pierrick coupé, Catherine Helmer, José V. Manjón, Helene Amieva, Francois Tison, Jean-Francois Dartigues and Gwenaelle Catheline. Differential annualized rates of hippocampal subfields atrophy in aging and future Alzheimer's clinical syndrome. Neurobiology of Aging, 2020.
Jose V. Manjón, Jose E. Romero, Roberto Vivo-Hernando, Gregorio Rubio-Navarro, Mariam De la Iglesia-Vaya, Fernando Aparici-Robles, Pierrick Coupé. Deep ICE: A Deep learning approach for MRI Intracranial Cavity Extraction. arXiv. https://arxiv.org/abs/2001.05720, 2020.
José V. Manjón, Alexa Bertó, José E. Romero, Enrique Lanuza, Roberto Vivo-Hernando, Fernando Aparici-Robles and Pierrick Coupe. pBrain: A novel pipeline for Parkinson related brain structure segmentation. Neuroimage:Clinical, 2020.
Jose V. Manjon and P. Coupé. MRI denoising using Deep Learning and Non-local averaging. arXiv. https://arxiv.org/abs/1911.04798, 2019.
Kilian Hett, Vinh-Thong Ta, Gwenaelle Catheline, Thomas Tourdias, Jose V. Manjón, Pierrick Coupe. Multimodal Hippocampal Subfield Grading For Alzheimer’s Disease Classification. Scientific Reports, 2019.
Charles Laidi, Tomas Hajek, Filip Spaniel, Marian Kolenic, Marc-Antoine d'Albis, Samuel Sarrazin, Jean-François Mangin, Edouard Duchesnay, Paolo Brambilla, Michele Wessa, Julia Linke, Mircea Polosan, Pauline Favre, Amelia L Versace, Mary L Phillips, Jose V. Manjón, Jose E. Romero; Franz Hozer, Marion Leboyer, Pierrick Coupe Josselin Houenou.Cerebellar parcellation in schizophrenia and bipolar disorder. Acta Psychiatrica Scandinavica, 2019.
Long Xie, Laura Wisse, John Pluta, Robin de Flores, Jose V. Manjón, Hongzhi Wang, Sandhitsu Das, Song-Lin Ding, David Wolk, Paul Yushkevich. Automated segmentation of medial temporal lobe subregions on in vivo T1-weighted MRI in early stages of Alzheimer’s disease. Human Brain mapping, 2019.
Pierrick Coupé, Jose V. Manjón, Enrique Lanuza, Gwenaelle Catheline. Timeline of brain alterations in Alzheimer's disease across the entire lifespan. Scientific Reports, 2019.
Kilian Hett, Vinh-Thong TA, José V. Manjón, Pierrick Coupé. Adaptive fusion of texture-based grading for Alzheimer’s disease classification. Computerized Medical Imaging and Graphics, 2018.
Sanna Huhtaniska, Iikka Korkala, Tuomas Heikka, Lassi Björnholm, Heli Lehtiniemi, Anja P. Hulkko, Jani Moilanen, Jussi Tohka, José V. Manjón, Pierrick Coupé, Vesa Kiviniemi, Matti Isohanni, Hannu Koponen, Graham Murray, Jouko Miettunen, Erika Jääskeläinena. Antipsychotic and benzodiazepine use and brain morphology in schizophrenia and affective psychoses – systematic reviews and birth cohort study. Psychiatry Research: Neuroimaging, 2018.
A. Carass, J. L. Cuzzocreo, S. Han, C. R. Hernandez-Castillo, P. E. Rasser, M. Ganz, V. Beliveau, M. Price, V. A. Cardenas, G. Fein, J. Dolz, I. Ben Ayed, C. Desrosiers, B. Thyreau, J. E. Romero, P. Coupé, J. V. Manjón, V. S. Fonov, D. L. Collins, S. H. Ying, D. Crocetti, B. A. Landman, S. H. M. ostofsky, P. A. T. hompson and J. L. Prince. Comparing fully automated state-of-the-art cerebellum parcellation from Magnetic Resonance Imaging. Neuroimage, 2018.
Vincent Planche, Ismail Koubiyr, José E. Romero, José V. Manjon, Pierrick Coupé, Mathilde Deloire, Vincent Dousset, Bruno Brochet, Aurélie Ruet and Thomas Tourdias. Regional hippocampal vulnerability in early multiple sclerosis: dynamic pathological spreading from dentate gyrus to CA1. Human Brain Mapping, 2018.
Jose V. Manjón, Pierrick Coupé, Parnesh Raniga, Ying Xi, Patricia Desmond, Jurgen Fripp, Olivier Salvado. MRI white matter lesion segmentation using an ensemble of neural networks and overcomplete patch-based voting. Computerized Medical Imaging and Graphics, 2018.
Jose E. Romero, Pierrick Coupe, José V. Manjón. HIPS: A new hippocampus subfield segmentation method. Neuroimage, 2017.
Pierrick Coupe, Gwenaelle Catheline, Enrique Lanuza, José V. Manjón. Towards a unified analysis of brain maturation and aging across the entire lifespan: A MRI analysis. Human Brain Mapping, 2017.
Sanna Huhtaniska, Erika Jääskeläinen, Tuomas Heikka, Jani S. Moilanen, Heli Lehtiniemi, Jussi Tohka, José V. Manjón, Pierrick Coupe, Lassi Björnholm, Hannu Koponen, Juha Veijola, Matti Isohanni, Vesa Kiviniemi, Graham K. Murray, Jouko Miettunen. Long-term antipsychotic and benzodiazepine use and brain volume changes in schizophrenia: The Northern Finland Birth Cohort 1966 study. Psychiatry Research: Neuroimaging, 2017.
Jose E. Romero, Pierrick Coupé, Rémi Giraud, Vinh-Thong Ta, Vladimir Fonov, Min Tae M. Park, M. Mallar Chakravarty, Aristotle N. Voineskos, Jose V. Manjón. CERES: A new cerebellum lobule segmentation method. Neuroimage, 147:916-924, 2017
Planche V., Ruet A., Coupé P., Lamargue-Hamel D., Deloire M., Pereira B., Manjón J.V., Munsch F., Moscufo N., Meier D.S., Guttmann C.R., Dousset V., Brochet B., Tourdias T. Hippocampal microstructural damage and memory impairment in clinically isolated syndrome suggestive of multiple sclerosis: A diffusion tensor MRI study. Multiple Sclerosis journal, accepted, 2016.
Xie L., Pluta j.B., Das S.R., Wisse L.E., Wang H., Mancuso L., Kliot D., Avants B.B., Ding S., Manjón J.V., Wolk D.A., Yushkevich P.A. Multi-Template Analysis of Human Perirhinal Cortex in Brain MRI: Explicitly Accounting for Anatomical Variability. Neuroimage, 144:183-202, 2016.
Jose V. Manjón and Pierrick Coupe. volBrain: an online MRI brain volumetry system. Frontiers in Neuroinformatics. 2016.
Næss-Schmidt E.T., Tietze A., Blichera J.U., Petersen M., Mikkelsen I.K., Coupé P., Manjón J.V., Eskildsen S.F. Automatic thalamus and hippocampus segmentation from MP2RAGE: comparison of publicly available methods and implications for DTI quantification. IJCARS. 2016.
Giraud R., Ta V-T., Papadakis N., Manjón J. V., Collins D.L., Coupé P., ADNI. An Optimized PatchMatch for Multi-scale and Multi-feature Label Fusion. NeuroImage, 124:770-782, 2016.
Coupé P., Fonov V.S., Bernard C., Zandifar A., Eskildsen S.F., Helmer C., Manjón J.V., Amieva H., Dartigues J.F., Allard M., Catheline G., Collins D.L. Detection of Alzheimer’s Disease Signature in MR Images Seven Years Before Conversion to Dementia: Toward an Early Individual Prognosis. Human Brain Mapping, 36(12):4758-4770. 2015.
Guizard N., Coupé P., Fonov V.S., Manjón J.V., Arnold D.L., Collins D.L. Rotation-invariant multi-contrast non-local means for MS lesion segmentation. Neuroimage: Clinical, 8:376-389. 2015.
Albarracin J.J., Garcia E.F., Manjón J.V., Robles M., Aparici F., Bonmati L.M., Garcia J.M. Automated glioblastoma segmentation based on a multiparametric structured unsupervised classification. Plos One, 10(5):e0125143, 2015.
Romero J.E., Manjón J.V., Tohka J., Coupé P., Robles M. Non-local Automatic Brain Hemisphere Segmentation. Magnetic Resonance Imaging, 33(4):474-484, 2015.
Manjón J.V., Coupe P., Buades A. MRI Noise Estimation and Denoising Using Non-Local PCA. Medical Image Analysis, 22:35-47. 2015.
Manjón J.V., Eskildsen S.F., Coupé P., Romero J.E., Collins D.L., Robles M. Non-local Intracranial Cavity Extraction. IJBI. Article ID 820205. 2014.
Manjon J.V, Coupé P., Concha L., Buades A, Collins D.L., Robles M. Diffusion Weighted Image Denoising using overcomplete Local PCA. PLoS ONE 8(9): e73021. doi:10.1371/journal.pone.0073021.2013.
Coupé P., Manjón J.V., Chamberland M., Descoteaux M. Collaborative patch-based super-resolution for diffusion-weighted images. NeuroImage,83:245-261, 2013.
Coupé P., Eskildsen S.F., Manjón J.V., Fonov V.S., Pruessner J.C., Allard M., Collins D.L., ADNI. Scoring by Nonlocal Image Patch Estimator for Early Detection of Alzheimer’s Disease. Neuroimage-clinical. 2012.
Coupé P., Munz M., Manjón J.V., Ruthazer E., Collins D.L. A CANDLE for a deeper in-vivo insight. Medical Image Analysis, 16(4):849-864, 2012
Coupé P., Eskildsen S.F., Manjón J.V., Fonov V., Collins D.L., ADNI. Simultaneous Segmentation and Grading of Anatomical Structures for Patient’s Classification: Application to Alzheimer’s Disease. Neuroimage, 59(4):3736-47, 2012.
Eskildsen S.F., Coupé P., Leung K.K., Fonov V., Manjón J.V., Guizard N., Wassef S., Østergaard L.R., Collins D.L., ADNI. BEaST: Brain Extraction based on nonlocal Segmentation Technique. Neuroimage, 59(3):2362-73, 2012.
Coupé P., Manjón J.V., Robles M., Collins D.L. Adaptive Multiresolution Non-Local Means Filter for 3D MR Image Denoising. IET Image processing 6(5): 558-568, 2012.
Manjón J.V., Coupé P., Buades A., Collins D.L., Robles M. New Methods for MRI Denoising based on Sparseness and Self-Similarity. Medical Image Analysis, 16(1):18-27, 2012.
Coupé P., Manjón J.V., Fonov V., Pruessner J., Robles M., Collins D.L. Patch-based Segmentation using Expert Priors: Application to Hippocampus and Ventricle Segmentation. NeuroImage,54(2):940-954, 2011.
Manjón J.V., Coupé P., Buades A., Collins D.L., Robles M. MRI Superresolution Using Self Similarity and Image Priors. International Journal of Biomedical Imaging, Article ID 425891, 2010
Manjón J.V., Tohka J., Robles M. Improved Estimates of Partial Volume Coefficients from Noisy Brain MRI Using Spatial Context. Neuroimage, 53(2), 480-490, 2010.
Manjón J.V., Coupé P., Buades A., Fonov V, Collins D.L., Robles M. Non-Local MRI Upsampling. Medical Image Analysis, 14(6), 784-792, 2010.
Coupé P, Manjón J.V., Gedamu E., Arnold D., Robles M., Collins D.L. Robust Rician Noise Estimation for MR Images. Medical Image Analysis, 14(4), 483-493, 2010.
Escartí M.J., De-la-Iglesia-Vayá M., Martí-Bonmatí L., Robles M., Carbonell J., Lull J.J., García-Martí G., Manjón J.V., Aguilar E.J., Aleman A., Sanjuán J. Increased amygdala and parahippocampal gyrus activation in schizophrenic patients with auditory hallucinations: an fMRI study using independent component analysis. Schizophrenia Research, 117, 31-41, 2010.
Thacker N.A., Manjón J.V., Bromiley P.A. A Statistical Interpretation of Non-local Means. IET Computer Vision, 4(3):162-172, 2010.
Manjón J.V., Coupé P., Martí-Bonmatí L., Robles M., Collins D.L. Adaptive Non-Local Means Denoising of MR Images with Spatially Varying Noise Levels. Journal of Magnetic Resonance Imaging, 31,192-203, 2010.
Manjón J.V., Thacker N.A., Lull J.J., Garcia-Martí G., Martí-Bonmatí L., Robles M. Multicomponent MR Image Denoising. International Journal of Biomedical imaging. vol 2009. Article ID 756897. 2009.
Manjón J.V., Carbonell-Caballero J., Lull J.J., García-Martí G., Martí-Bonmatí L., Robles M. MRI denoising using Non Local Means. Medical Image Analysis, 12(4):514-23, 2008.
Manjón j.V., Tohka J., García-Martí G., Carbonell-Caballero J., Lull J.J., Martí-Bonmatí L., Robles M. Robust MRI Brain Tissue Parameter Estimation by Multistage Outlier Rejection. Magnetic Resonance in Medicine, 59:866-873, 2008.
Garcia-Marti G., Aguilar E.J., Lull J.J., Marti-Bonmati L., Escarti M.J., Manjon J.V., Moratal D., Robles M., Sanjuan J. Schizophrenia with auditory hallucinations: A voxel-based morphometry study. Prog Neuropsychopharmacol Biol Psychiatry, 32(1):72-80, 2007.
Manjón J.V., Lull J.J., Carbonell-Caballero J., García-Martí G., Martí-Bonmatí L., Robles M. A nonparametric MRI inhomogeneity correction method. Medical Image Analysis, 11(4): 336-345, 2007.
Carbonell-Caballero J., Manjon J.V., Marti-Bonmati L., Olalla J.R., Casanova B., de la Iglesia-Vaya M., Coret F., Robles M. Accurate quantification methods to evaluate cervical cord atrophy in multiple sclerosis patients. MAGMA 19(5):237-46, 2006.
Simon J.E., Bristow M.S., Lu H., Lauzon M.L., Brown R.A., Manjon J.V., Eliasziw M., Frayne R., Buchan A.M., Demchuk A.M., Mitchell J.R. A novel method to derive separate gray and white matter cerebral blood flow measures from MR imaging of acute ischemic stroke patients. J Cereb Blood Flow Metab. 2005.
Manjón J.V., Martí-Bonmatí L., Robles M., Celda B. Postproceso en Imagen Médica: Morfología, Funcional y Molecular. Informática y Salud I+S,45:62-70, 2004.
Manjón J.V. Robles M., Lull J.J., Carbonell J. de la Iglesia A. Mapas paramétricos cerebrales basados en RMN. Informática Biomédica 1:217-230, 2004.
Rico M.M., de la Calle J.D., Sierra A.P., Garcia G.B., del Arco J.C., Díaz J., Manjón J.V., Loureir J.P., Pedreira N., Rabuñal J.R. Almacenamiento, procesado y análisis de imagen en un sistema de Informática Biomédica. Informatica y salud 46:22-24, 2004.
Mari-Bonmati L., Torraba E., Manjón J.V., Robles M., Arana E., Molla E., Costa S. Comparison of different injection forms in CT examination of the upper abdomen. Abdominal Imaging, 28:240-246. 2003.
Navarro I.E., Manjon J.V., Martí-Bonmatí L., Simó M. Brillos en imágenes de difusión: ¿Son efecto de una difusión disminuida o del brillo por T2?. Radiología, 44:80. 2002.
García Gómez J.M., Martínez Bisbal M.C., Manjon J.V., Martí-Bonmatí L., Robles M. Clasificación de espectros de resonancia magnética de pacientes con Esclersis Múltiple remitente recurrente (EMRR) mediante redes neuronales artificiales (RNA). Radiología, 44:231. 2002.
Gomez F., Manjon J.V., Marti-Bonmati L., Molla E., Dosda R., Robles M. Mapas de Resonancia Magnética funcional obtenidos con PC. Radiología, 43(2):55-61. 2001.